usefragsph not on There are 4 ligand heavy atoms Ligand center of coords (x y z): 15.9925 -4.731 58.06325 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 507 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 324 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 322 Number of spheres polar: 57, nonpolar: 194, out of current total: 322 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.32829 25.97248 -14.57900 4.86633 48.09291 68.02628 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 176 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 149 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 132 Spheres center of coords (x y z): 18.8569624242424 -1.9477425 60.810504469697 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.53995835796734 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 4