usefragsph not on There are 4 ligand heavy atoms Ligand center of coords (x y z): 15.376 -5.1105 58.46375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 478 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 295 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 294 Number of spheres polar: 73, nonpolar: 148, out of current total: 294 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.46577 24.95398 -15.10789 4.67910 48.80127 68.37794 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 155 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 139 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 120 Spheres center of coords (x y z): 18.7091630833333 -2.39802933333333 60.8289024166667 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.36641608239843 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 4