usefragsph not on
There are 6 ligand heavy atoms
Ligand center of coords (x y z): 3.60616666666667 -0.133333333333333 7.90366666666667
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 578
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 454
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 453
Number of spheres polar: 116, nonpolar: 206, out of current total: 453
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -5.58088 13.33658 -10.08453 7.60947 -0.70428 16.29569
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 172
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 149
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 115
Spheres center of coords (x y z): 3.54723965217391 -1.24269373913043 7.74999626086957
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.9694061390026
Final number of output spheres is: 45
Number of polar spheres: 15
Number of nonpolar spheres: 13
Number of spheres that are near neither polar nor nonpolar receptor atoms: 17
Final number of spheres that are from crystallographic ligand: 6