usefragsph not on
There are 20 ligand heavy atoms
Ligand center of coords (x y z): -3.4085 5.7704 15.3726
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 761
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 535
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 534
Number of spheres polar: 208, nonpolar: 255, out of current total: 534
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.68683 6.52240 -4.21270 15.59025 5.51894 25.25013
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 256
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 216
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 167
Spheres center of coords (x y z): -3.34379167664671 4.67718874251497 13.3834964670659
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 3.84431806118587
Final number of output spheres is: 60
Number of polar spheres: 9
Number of nonpolar spheres: 46
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 20