usefragsph not on There are 4 ligand heavy atoms Ligand center of coords (x y z): 18.99575 25.1615 19.48575 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 517 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 317 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 317 Number of spheres polar: 54, nonpolar: 184, out of current total: 317 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.95742 28.55573 16.38494 35.16099 9.66226 25.11089 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 168 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 152 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 144 Spheres center of coords (x y z): 21.0615247222222 30.1050811111111 19.290555 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.31896302688665 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 4