usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 22.875 31.7619615384615 19.6312692307692 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 810 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 540 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 539 Number of spheres polar: 133, nonpolar: 282, out of current total: 539 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.29092 32.80210 24.86423 41.70383 9.67169 29.56842 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 295 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 257 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 213 Spheres center of coords (x y z): 21.5369846478873 33.1320672300469 18.8531245070422 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.9832531178146 Final number of output spheres is: 60 Number of polar spheres: 9 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 22 Final number of spheres that are from crystallographic ligand: 26