usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 21.5982222222222 31.770962962963 19.9005555555556 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 748 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 510 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 510 Number of spheres polar: 114, nonpolar: 286, out of current total: 510 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.89949 31.28904 23.04300 41.70414 9.97778 28.75987 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 185 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 158 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 130 Spheres center of coords (x y z): 21.4315226153846 33.5632226923077 18.8295736923077 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.61046181549696 Final number of output spheres is: 45 Number of polar spheres: 7 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 27