usefragsph not on
There are 13 ligand heavy atoms
Ligand center of coords (x y z): -5.28130769230769 3.37507692307692 15.4998461538462
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 712
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 496
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 489
Number of spheres polar: 164, nonpolar: 226, out of current total: 489
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.20780 4.63425 -5.22324 13.36204 5.75337 25.47017
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 249
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 214
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 188
Spheres center of coords (x y z): -4.49294148936171 5.39046515957446 12.0283937234043
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.49235575396327
Final number of output spheres is: 60
Number of polar spheres: 21
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 13