There are 13 ligand heavy atoms Ligand center of coords (x y z): -5.52961538461538 3.13384615384615 14.987 useligsph not on Starting number of spheres from sph/sph cluster 0: 666 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 471 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 464 Number of spheres polar: 97, nonpolar: 253, out of current total: 464 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.80159 6.33185 -8.48076 14.75172 4.35411 23.37164 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 157 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 131 No crystallographic spheres present, so determining sphere nearest center of ligand (x y z): -5.52961538461538 3.13384615384615 14.987 Center point: 67 xyz: -5.50818 3.30897 15.13575 After continuity checking, number of spheres is: 104 Final number of output spheres is: 104 Number of polar spheres: 20 Number of nonpolar spheres: 56 Number of spheres that are near neither polar nor nonpolar receptor atoms: 28 Final number of spheres that are from crystallographic ligand: 0