usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 16.6952857142857 4.99807142857143 15.1358571428571 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 575 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 393 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 388 Number of spheres polar: 105, nonpolar: 213, out of current total: 388 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.86063 26.43438 -4.21864 14.92970 5.63288 23.94996 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 208 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 190 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 167 Spheres center of coords (x y z): 16.938547245509 6.35387634730539 12.6370821556886 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.37818081929421 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 14