usefragsph not on There are 13 ligand heavy atoms Ligand center of coords (x y z): 16.2988461538461 4.74246153846154 15.1576923076923 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 599 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 412 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 406 Number of spheres polar: 90, nonpolar: 226, out of current total: 406 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.89605 26.25802 -4.32386 14.65679 5.51757 23.67242 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 227 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 204 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 173 Spheres center of coords (x y z): 17.0874603468208 6.23249271676301 12.3343563583815 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.57231591629212 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 13