usefragsph not on
There are 13 ligand heavy atoms
Ligand center of coords (x y z): -5.54823076923077 3.279 15.222
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 649
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 438
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 433
Number of spheres polar: 109, nonpolar: 234, out of current total: 433
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.17292 4.30239 -6.39963 13.04257 5.56100 23.22953
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 153
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 124
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 117
Spheres center of coords (x y z): -4.50432581196581 5.87349717948718 11.7973594017094
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.85405841504973
Final number of output spheres is: 45
Number of polar spheres: 10
Number of nonpolar spheres: 29
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 13