usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): -4.30521428571429 2.89835714285714 14.4908571428571 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 649 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 460 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 450 Number of spheres polar: 100, nonpolar: 257, out of current total: 450 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.31630 5.52321 -6.38905 12.72936 6.20252 24.44975 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 247 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 221 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 195 Spheres center of coords (x y z): -4.18175625641025 4.38393687179487 12.0265328205128 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.68710633803311 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 14