usefragsph not on There are 11 ligand heavy atoms Ligand center of coords (x y z): -0.921909090909091 3.93936363636364 11.3528181818182 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 529 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 460 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 449 Number of spheres polar: 134, nonpolar: 210, out of current total: 449 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.85593 9.04679 -5.49249 13.44477 1.56935 21.15225 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 186 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 154 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 144 Spheres center of coords (x y z): -0.623799722222222 4.29610923611111 9.32288131944444 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.91515981357029 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 11