usefragsph not on
There are 15 ligand heavy atoms
Ligand center of coords (x y z): -4.139 4.06233333333333 15.3083333333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 609
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 424
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 421
Number of spheres polar: 100, nonpolar: 229, out of current total: 421
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.18184 5.43015 -5.87156 13.63538 5.76107 25.11696
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 231
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 208
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 167
Spheres center of coords (x y z): -3.92022856287425 4.58508011976048 12.566431497006
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.36650917467741
Final number of output spheres is: 60
Number of polar spheres: 14
Number of nonpolar spheres: 38
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 15