usefragsph not on
There are 5 ligand heavy atoms
Ligand center of coords (x y z): -5.9874 0.6028 16.9622
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 515
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 291
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 289
Number of spheres polar: 85, nonpolar: 135, out of current total: 289
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.40719 3.92497 -5.83174 10.58489 7.06322 23.36793
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 151
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 130
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 113
Spheres center of coords (x y z): -3.51945867256637 5.25941044247788 13.0643254867257
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 8.17767409651466
Final number of output spheres is: 60
Number of polar spheres: 33
Number of nonpolar spheres: 18
Number of spheres that are near neither polar nor nonpolar receptor atoms: 9
Final number of spheres that are from crystallographic ligand: 5