usefragsph not on
There are 13 ligand heavy atoms
Ligand center of coords (x y z): -4.15253846153846 5.87284615384615 10.5690769230769
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 580
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 417
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 409
Number of spheres polar: 100, nonpolar: 208, out of current total: 409
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.93231 5.67767 -4.08403 15.84684 1.01600 20.29883
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 236
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 206
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 178
Spheres center of coords (x y z): -4.68139039325843 5.57747280898876 11.40086
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.82013597911131
Final number of output spheres is: 60
Number of polar spheres: 12
Number of nonpolar spheres: 20
Number of spheres that are near neither polar nor nonpolar receptor atoms: 28
Final number of spheres that are from crystallographic ligand: 13