There are 22 ligand heavy atoms Ligand center of coords (x y z): -4.7305 5.12190909090909 13.6185909090909 useligsph not on Starting number of spheres from sph/sph cluster 0: 708 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 478 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 462 Number of spheres polar: 112, nonpolar: 240, out of current total: 462 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.24445 7.09765 -5.79894 17.11789 3.89573 23.76531 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 165 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 142 No crystallographic spheres present, so determining sphere nearest center of ligand (x y z): -4.7305 5.12190909090909 13.6185909090909 Center point: 63 xyz: -5.18547 5.02941 13.47838 After continuity checking, number of spheres is: 109 Final number of output spheres is: 109 Number of polar spheres: 22 Number of nonpolar spheres: 48 Number of spheres that are near neither polar nor nonpolar receptor atoms: 39 Final number of spheres that are from crystallographic ligand: 0