usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): -5.1455 2.14864285714286 14.8845714285714 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 630 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 436 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 430 Number of spheres polar: 119, nonpolar: 238, out of current total: 430 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.18148 4.82354 -7.73958 11.99300 5.71392 23.47340 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 147 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 123 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 114 Spheres center of coords (x y z): -3.30974868421053 4.7168997368421 11.0113247368421 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.48238763455109 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 14