usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): -0.948730769230769 4.167 -18.7017307692308 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 828 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 503 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 497 Number of spheres polar: 123, nonpolar: 273, out of current total: 497 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.25507 8.68551 -5.82073 11.23241 -28.52892 -8.83110 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 174 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 147 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 126 Spheres center of coords (x y z): 0.130965555555555 2.75429920634921 -18.7067022222222 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.00154136688124 Final number of output spheres is: 45 Number of polar spheres: 9 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 26