usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): -16.3586153846154 14.8374230769231 -12.3355 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 762 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 435 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 432 Number of spheres polar: 104, nonpolar: 247, out of current total: 432 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -26.34565 -7.90278 5.14502 22.86652 -21.98699 -4.14407 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 230 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 202 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 181 Spheres center of coords (x y z): -16.5330118232044 15.7279733701657 -12.278283038674 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.56709679420761 Final number of output spheres is: 60 Number of polar spheres: 11 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 18 Final number of spheres that are from crystallographic ligand: 26