usefragsph not on There are 11 ligand heavy atoms Ligand center of coords (x y z): 15.5185454545455 4.08409090909091 16.0141818181818 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 572 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 395 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 391 Number of spheres polar: 92, nonpolar: 212, out of current total: 391 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.50130 25.34023 -5.63117 13.99156 6.43012 24.86843 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 139 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 111 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 100 Spheres center of coords (x y z): 17.4468998 6.7124318 12.349904 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.57872988708938 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 11