usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): 15.987 4.0065 16.0229 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 518 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 356 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 350 Number of spheres polar: 78, nonpolar: 200, out of current total: 350 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.15327 25.91100 -5.79074 13.75054 6.42025 24.80319 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 132 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 110 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 100 Spheres center of coords (x y z): 17.7290829 6.687284 12.4096681 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.98910954064186 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 10