usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 21.8502307692308 30.9855 19.7497692307692 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 744 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 489 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 485 Number of spheres polar: 105, nonpolar: 290, out of current total: 485 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.41639 31.83400 24.28116 40.98052 10.65913 29.65887 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 266 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 233 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 197 Spheres center of coords (x y z): 20.3007743654822 32.3488690862944 18.8684929441624 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.35242342253251 Final number of output spheres is: 60 Number of polar spheres: 10 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 22 Final number of spheres that are from crystallographic ligand: 26