usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): -4.51734782608696 2.45169565217391 13.1848260869565 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 712 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 473 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 464 Number of spheres polar: 114, nonpolar: 258, out of current total: 464 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.22187 5.42700 -7.54188 12.41253 3.20409 22.86148 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 152 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 128 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 109 Spheres center of coords (x y z): -4.08558981651376 5.54528100917431 11.9228187155963 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.36570034849518 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 23