There are 13 ligand heavy atoms Ligand center of coords (x y z): -4.90769230769231 3.54938461538462 14.6925384615385 useligsph not on Starting number of spheres from sph/sph cluster 0: 602 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 420 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 408 Number of spheres polar: 94, nonpolar: 221, out of current total: 408 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.04667 6.58946 -7.65449 15.22536 3.31029 24.14248 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 159 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 136 No crystallographic spheres present, so determining sphere nearest center of ligand (x y z): -4.90769230769231 3.54938461538462 14.6925384615385 Center point: 60 xyz: -5.23917 3.51594 14.47277 After continuity checking, number of spheres is: 119 Final number of output spheres is: 119 Number of polar spheres: 30 Number of nonpolar spheres: 54 Number of spheres that are near neither polar nor nonpolar receptor atoms: 35 Final number of spheres that are from crystallographic ligand: 0