usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): -4.53231578947368 4.58405263157895 14.5913684210526 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 635 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 401 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 400 Number of spheres polar: 90, nonpolar: 228, out of current total: 400 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.30409 5.39922 -5.32623 13.86006 4.85037 24.56485 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 151 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 125 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 97 Spheres center of coords (x y z): -4.67630319587629 6.20713402061855 12.0896908247423 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.98719385501134 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 19