usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): -5.26207142857143 2.88514285714286 15.2029285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 610 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 401 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 400 Number of spheres polar: 88, nonpolar: 228, out of current total: 400 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.24516 4.63250 -6.93200 12.86281 5.81563 23.22119 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 159 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 130 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 119 Spheres center of coords (x y z): -4.42688605042017 5.53109907563025 12.2290360504202 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.65898664297125 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 14