usefragsph not on
There are 24 ligand heavy atoms
Ligand center of coords (x y z): -3.08820833333333 5.41695833333333 14.3479583333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 689
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 428
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 425
Number of spheres polar: 97, nonpolar: 234, out of current total: 425
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.44061 6.83646 -4.45334 14.79266 4.88540 24.20994
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 238
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 207
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 164
Spheres center of coords (x y z): -3.82425207317073 4.58294335365854 12.7622410365854
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 3.45844941476212
Final number of output spheres is: 60
Number of polar spheres: 12
Number of nonpolar spheres: 34
Number of spheres that are near neither polar nor nonpolar receptor atoms: 14
Final number of spheres that are from crystallographic ligand: 24