usefragsph not on
There are 20 ligand heavy atoms
Ligand center of coords (x y z): -5.74635 6.96185 9.77685
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 620
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 456
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 446
Number of spheres polar: 133, nonpolar: 214, out of current total: 446
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.60562 4.20749 -2.96181 16.78808 -0.17668 19.67577
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 268
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 230
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 193
Spheres center of coords (x y z): -5.5028967357513 6.94037715025907 10.5571698445596
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.82111176427635
Final number of output spheres is: 60
Number of polar spheres: 18
Number of nonpolar spheres: 27
Number of spheres that are near neither polar nor nonpolar receptor atoms: 15
Final number of spheres that are from crystallographic ligand: 20