usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): -2.92 6.1884375 14.26675 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 676 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 488 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 486 Number of spheres polar: 130, nonpolar: 247, out of current total: 486 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.74073 6.87400 -3.32895 16.18088 4.45063 24.21602 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 186 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 153 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 122 Spheres center of coords (x y z): -4.65835721311475 6.90578647540983 11.6985213934426 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.56883606514967 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 16