usefragsph not on There are 47 ligand heavy atoms Ligand center of coords (x y z): 18.3201063829787 7.38363829787234 13.3026595744681 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 864 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 554 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 549 Number of spheres polar: 111, nonpolar: 308, out of current total: 549 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.50284 28.30300 -2.54900 17.26425 3.33953 23.20244 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 310 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 279 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 226 Spheres center of coords (x y z): 17.0295963274336 7.2023089380531 12.0780710619469 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.61698713968709 Final number of output spheres is: 60 Number of polar spheres: 9 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 26 Final number of spheres that are from crystallographic ligand: 47