usefragsph not on
There are 15 ligand heavy atoms
Ligand center of coords (x y z): 16.3514 4.4566 14.8576
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 711
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 501
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 498
Number of spheres polar: 117, nonpolar: 274, out of current total: 498
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.35663 26.29241 -5.47785 14.44876 5.04666 24.64486
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 282
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 247
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 217
Spheres center of coords (x y z): 17.0711296313364 6.86194119815668 12.1092176036866
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.26051265531387
Final number of output spheres is: 60
Number of polar spheres: 17
Number of nonpolar spheres: 34
Number of spheres that are near neither polar nor nonpolar receptor atoms: 9
Final number of spheres that are from crystallographic ligand: 15