usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): -3.52027777777778 6.05988888888889 14.6069444444444 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 626 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 396 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 390 Number of spheres polar: 70, nonpolar: 224, out of current total: 390 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.33590 6.25531 -3.75047 15.99845 4.69574 23.52347 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 155 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 119 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 94 Spheres center of coords (x y z): -3.87833297872341 4.68455861702128 12.6781624468085 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.83126146059219 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 18