usefragsph not on
There are 33 ligand heavy atoms
Ligand center of coords (x y z): -2.79533333333333 3.63063636363636 11.997
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1013
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 645
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 642
Number of spheres polar: 116, nonpolar: 381, out of current total: 642
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.25056 7.16470 -6.29416 13.59750 2.08257 21.75111
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 336
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 296
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 275
Spheres center of coords (x y z): -2.21315018181818 4.65842850909091 10.5868615636364
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.66728576985902
Final number of output spheres is: 60
Number of polar spheres: 12
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 17
Final number of spheres that are from crystallographic ligand: 33