usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): -4.57778571428572 3.38007142857143 15.233 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 633 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 487 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 482 Number of spheres polar: 126, nonpolar: 252, out of current total: 482 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.16368 5.39819 -4.75040 13.37993 5.51513 24.89858 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 176 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 145 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 117 Spheres center of coords (x y z): -3.42950769230769 5.51176324786325 11.5417157264957 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.99647767396535 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 14