usefragsph not on
There are 23 ligand heavy atoms
Ligand center of coords (x y z): -3.45321739130435 5.83269565217391 14.1569565217391
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 754
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 472
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 462
Number of spheres polar: 96, nonpolar: 256, out of current total: 462
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.02769 6.46574 -4.01288 15.73056 4.52224 24.12201
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 258
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 224
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 178
Spheres center of coords (x y z): -4.02202747191011 4.97640820224719 11.885465505618
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.04710207022262
Final number of output spheres is: 60
Number of polar spheres: 10
Number of nonpolar spheres: 33
Number of spheres that are near neither polar nor nonpolar receptor atoms: 17
Final number of spheres that are from crystallographic ligand: 23