usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): -3.36484 3.87136 13.85088
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 677
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 476
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 469
Number of spheres polar: 97, nonpolar: 273, out of current total: 469
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.14555 6.60848 -5.95723 13.54763 4.15759 23.75864
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 256
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 229
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 192
Spheres center of coords (x y z): -4.36504010416667 5.22040369791667 11.6970463020833
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.27063251213245
Final number of output spheres is: 60
Number of polar spheres: 10
Number of nonpolar spheres: 36
Number of spheres that are near neither polar nor nonpolar receptor atoms: 14
Final number of spheres that are from crystallographic ligand: 25