usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): -5.19886363636364 5.19795454545455 13.1874090909091 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 721 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 484 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 475 Number of spheres polar: 154, nonpolar: 235, out of current total: 475 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -14.11211 4.08335 -4.33136 14.98235 4.25519 23.09847 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 253 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 226 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 206 Spheres center of coords (x y z): -4.84583834951456 5.69216529126214 11.8659121359223 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.01045454601304 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 22