There are 29 ligand heavy atoms Ligand center of coords (x y z): -5.11548275862069 7.35475862068966 13.025 useligsph not on Starting number of spheres from sph/sph cluster 0: 807 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 522 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 509 Number of spheres polar: 118, nonpolar: 271, out of current total: 509 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.49974 6.45860 -4.38500 19.17430 1.07430 24.98400 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 194 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 154 No crystallographic spheres present, so determining sphere nearest center of ligand (x y z): -5.11548275862069 7.35475862068966 13.025 Center point: 90 xyz: -4.84279 5.75971 12.51632 After continuity checking, number of spheres is: 116 Final number of output spheres is: 116 Number of polar spheres: 24 Number of nonpolar spheres: 54 Number of spheres that are near neither polar nor nonpolar receptor atoms: 38 Final number of spheres that are from crystallographic ligand: 0