usefragsph not on
There are 29 ligand heavy atoms
Ligand center of coords (x y z): -5.11548275862069 7.35475862068966 13.025
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 807
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 464
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 453
Number of spheres polar: 101, nonpolar: 253, out of current total: 453
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.49974 4.60200 -1.11689 17.31329 3.92646 22.79438
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 253
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 229
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 223
Spheres center of coords (x y z): -4.80632076233184 6.82332632286996 11.8106788789238
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.71853744766369
Final number of output spheres is: 60
Number of polar spheres: 12
Number of nonpolar spheres: 41
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 29