usefragsph not on
There are 22 ligand heavy atoms
Ligand center of coords (x y z): -3.09190909090909 4.04368181818182 14.2334545454545
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 739
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 475
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 469
Number of spheres polar: 108, nonpolar: 259, out of current total: 469
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.41003 6.83800 -5.90632 13.23959 4.63077 24.18546
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 261
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 230
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 169
Spheres center of coords (x y z): -3.88122325443787 4.80583390532545 12.1669079881657
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.27059654390788
Final number of output spheres is: 60
Number of polar spheres: 9
Number of nonpolar spheres: 38
Number of spheres that are near neither polar nor nonpolar receptor atoms: 13
Final number of spheres that are from crystallographic ligand: 22