Distance from surface specified: 1.80 There are 8 ligand heavy atoms Ligand center of coords (x y z): -5.9115 1.38725 16.824 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 5378 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 4845 WARNING: removing a crystallographic sphere that is distance 1.998735100007 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 4787 Number of spheres polar: 2424, nonpolar: 1887, out of current total: 4787 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -17.74580 8.00880 -12.60100 15.38660 2.84480 30.79380 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 551 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 309 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 276 Spheres center of coords (x y z): -1.18699492753623 5.2083920289855 13.1949536231884 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 11.9236723928069 Final number of output spheres is: 200 Number of polar spheres: 87 Number of nonpolar spheres: 102 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 7