usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): -9.09171875 -4.028625 24.2428125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1500 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 801 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 795 Number of spheres polar: 316, nonpolar: 243, out of current total: 795 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -18.69110 0.82308 -14.01739 5.87299 14.25691 34.23627 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 461 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 400 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 348 Spheres center of coords (x y z): -10.6006768390805 -5.4959533908046 25.0577790229885 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.34826781266238 Final number of output spheres is: 60 Number of polar spheres: 43 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 32