usefragsph not on There are 41 ligand heavy atoms Ligand center of coords (x y z): -72.3406097560976 29.629243902439 37.4203902439024 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1176 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 45 WARNING: removing a crystallographic sphere that is distance 111.731350421446 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 112.419004452094 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 110.87795601922 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 111.179612906324 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 109.657192039556 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 110.124782342577 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 113.442185570448 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 109.149049936314 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 37 Number of spheres polar: 11, nonpolar: 17, out of current total: 37 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -99.50100 -80.49344 20.54800 38.34500 41.07900 49.41200 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 37 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 37 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 33 Final number of output spheres is: 33 Number of polar spheres: 10 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 33