usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): 48.8734722222222 26.9891111111111 93.0450555555555 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1445 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 878 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 874 Number of spheres polar: 333, nonpolar: 264, out of current total: 874 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 38.89300 58.05874 17.11200 36.95419 83.07680 103.02984 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 524 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 458 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 423 Spheres center of coords (x y z): 46.9655808747045 28.7447899527187 93.1876364775415 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.52182720710034 Final number of output spheres is: 60 Number of polar spheres: 30 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 36