usefragsph not on There are 44 ligand heavy atoms Ligand center of coords (x y z): 75.89725 -19.9036136363636 98.2141136363636 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1225 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 696 WARNING: removing a crystallographic sphere that is distance 0.713796889878341 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 695 Number of spheres polar: 267, nonpolar: 267, out of current total: 695 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 66.02187 85.76563 -29.85300 -9.92013 88.21935 108.00900 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 256 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 214 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 174 Spheres center of coords (x y z): 75.8417416091954 -20.2893415517241 96.5624982183908 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.58797898515971 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 43