usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 34.1582666666667 34.3363333333333 31.0286666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 813 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 508 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 500 Number of spheres polar: 229, nonpolar: 183, out of current total: 500 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.24605 44.14164 24.75061 44.31891 21.03671 41.02533 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 279 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 238 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 180 Spheres center of coords (x y z): 35.8805094444444 38.0017866111111 30.1740979444444 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.45082978034828 Final number of output spheres is: 60 Number of polar spheres: 30 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 15