usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 34.55785 36.20165 30.9788 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 759 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 515 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 502 Number of spheres polar: 244, nonpolar: 145, out of current total: 502 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 26.18394 44.45453 26.49660 45.79331 20.98421 40.91557 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 194 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 152 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 124 Spheres center of coords (x y z): 35.5572430645161 38.4887779032258 29.6995798387097 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.14642282723438 Final number of output spheres is: 45 Number of polar spheres: 23 Number of nonpolar spheres: 5 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 20