usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 34.9714761904762 35.6896190476191 32.9218095238095 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 820 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 484 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 474 Number of spheres polar: 223, nonpolar: 165, out of current total: 474 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 25.79976 44.54322 26.75538 44.93713 22.95473 42.85000 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 172 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 143 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 126 Spheres center of coords (x y z): 35.8935420634921 37.8492988888889 30.8710945238095 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.99623386855499 Final number of output spheres is: 45 Number of polar spheres: 24 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 21